From Reads to viral detection
From reads to consensus sequence, mutations list, alignments, Pango lineage classification, etc.
From consensus sequences to phylogeographic and temporal analysis and metadatada navigation
Walkthrough INSaFLU by logging into the "demo" account
INSaFLU is under active development in order to have additional features, such as modules to automatically detect virus reassortment and to perform temporal and geographical data integration and visualization.
If you use INSaFLU in your work, please cite this publication:
Borges V, Pinheiro M et al. Genome Medicine (2018) 10:46https://doi.org/10.1186/s13073-018-0555-0
INSaFLU development is being co-funded by the European Commission on behalf of OneHealth EJP TELE-Vir project.https://onehealthejp.eu/jrp-tele-vir/
We thank the Infraestrutura Nacional de Computação Distribuída (INCD) for providing computational resources for testing the INSaFLU platform. INCD was funded by FCT and FEDER under the project 22153-01/SAICT/2016